Just went with the Wonder Boy CE for me.
Seeing this is probably one of the biggest releases for LRG as of yet, they probably should have released more copies. I personally don't buy anything from LRG because I want or hope for it to be rare. I simply buy them because as a collector, I want physical copies of my games. Especially being a retro enthusiast, and most of these indie titles are catering to that (my collection of PS4 games at this point makes it an overpowered glorified retro machine). And the guys at LRG started this whole business of the same premise, yet they continue to under cut supply of each release to play it safe basically screwing over the same people they set out to serve in the first place.
And the bundle idea was pretty shady in my opinion, especially being that both games are at completely opposite ends of the table from each other. Not a smart bundle by any means. Hope they come up with a better solution in the future. Selling out immediately shouldn't be their main goal any more. They clearly have all the money they need at this point. More copies should be main priority going forward.